The best replacement for compound microscope is electron microscope.

The best alternatives to compound microscope are rated as following:
★★★★★  electron microscope
★★★★  dissecting microscope
★★★  light microscope
★★  stereo microscope
★★  simple microscope
★★  stereoscope
★  stereo
★  dissection microscope
★  stereoscopic microscope
★  early microscope
  electronic microscope

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compound microscope
electron microscope
dissecting microscope