The best replacement for virtual colonoscopy is conventional colonoscopy.

The best alternatives to virtual colonoscopy are rated as following:
★★★★★  conventional colonoscopy
★★★★★  colonoscopy
★★★  traditional colonoscopy
★★★  barium enema
★★★  regular colonoscopy
★★  optical colonoscopy
  standard colonoscopy

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No companions for virtual colonoscopy have been suggested so far.
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Google Trends

Scale is based on the average worldwide traffic of virtual colonoscopy in all years. Click on graph for more.
virtual colonoscopy
conventional colonoscopy
colonoscopy