The best replacement for subordinate is independent.

The best alternatives to subordinate are rated as following:
★★★★★  independent
★★★★★  coordinate
★★★★  independent clause
★★★★  peer
★★★  subservient
★★★  independent clauses
★★★  dominant
★★  main clause
★★  coordinate clause
★  superordinate
★  colleague
★  superior
★  dominant groups

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subordinate
independent
coordinate