The best replacement for rooted is unrooted.

The best alternatives to rooted are rated as following:
★★★★★  unrooted
★★★★  unlocked
★★★  unrooted phylogenetic tree
★★★  unrooted tree
★★  routed
★  jailbroken
★  unrooted trees
★  unrooted phylogenetic trees
  deeply rooted
  unrooted trees phylogenetics

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