The best replacement for repeated measures anova is manova.

The best alternatives to repeated measures anova are rated as following:
★★★★★  manova
★★★★  ancova
★★★  one way anova
★★★  paired t test
★★★  two way anova
★★  anova
★★  mixed model
★★  t test
★  t-test
★  independent measures anova
★  gee
  factorial anova

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