The best replacement for jython is python.

The best alternatives to jython are rated as following:
★★★★★  python
★★★★  groovy
★★★  jruby
★★  scala
★★  cpython
★  pypy
★  cython
★  ironpython
★  clojure
★  jacl
★  jpython
  cpython speed
  jython
  python benchmarks

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Google Trends

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jython
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