The best replacement for file system is database.

The best alternatives to file system are rated as following:
★★★★★  database
★★★  dbms
★★  database system
★★  fat32
★  ntfs
★  database management system
★  mastered
★  windows ntfs
★  partition
★  object storage
★  ntfs file system
★  operating system
★  fat file system
★  windows file system
★  directory
  rdbms
  raw device
  linux file system
  msdb ssis
  unix file system
  fat32 file system
  ntfs file system quick
  asm
  msdb
  mac os extended
  fat
  mount point
  relational database

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Google Trends

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file system
database
dbms