The best replacement for tom waits is bob dylan.

The best alternatives to tom waits are rated as following:
★★★★★  bob dylan
★★★★★  nick cave
★★  captain beefheart
★  frito lay
★  beefheart
  leonard cohen
  gza

Your alternative for tom waits is not listed? Suggest!
Speaking about tom waits, one probably shouldn't forget about primus.

Other search terms related to tom waits and their ratings are:
★★★★★ primus
★★★★ kronos quartet
★★★ confetti in my hair
★ little drop of poison
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tom waits
bob dylan
nick cave