The best replacement for nucleotide is nucleoside.

The best alternatives to nucleotide are rated as following:
★★★★★  nucleoside
★★★★  nucleic acid
★★★  base
★★  nitrogenous base
★  nucleobase
★  gene
★  amino acid
★  base pair
★  allele
★  codon
★  chromosome
★  nucleosome
★  rna nucleotide
★  ribonucleotide
  nucleoside triphosphate
  nucleotide

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nucleotide
nucleoside
nucleic acid