The best replacement for muffin is cupcake.

The best alternatives to muffin are rated as following:
★★★★★  cupcake
★★★  bagel
★★  donut
★★  cake
★  scone
★  cupcake recipes
★  croissant
★  barm
★  biscuit
★  scone healthier
  bagel healthier
  bagel calories
  crumpet
  donut calories
  toast
  chocolate cupcake
  cookie
  cup cake
  cupcakes
  white bread
  doughnut
  filet o fish

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Google Trends

Scale is based on the average worldwide traffic of muffin in all years. Click on graph for more.
muffin
cupcake
bagel