The best replacement for microbiology is biochemistry.

The best alternatives to microbiology are rated as following:
★★★★★  biochemistry
★★★★★  biology
★★★★  molecular biology
★★  biotechnology
★★  chemistry
★★  cell biology
★  genetics
★  anatomy and physiology
★  physiology
★  biology major
★  microbiology
★  neuroscience
★  medical technology
★  biotechnology which is better
★  biomedical science
★  organic chemistry
★  immunology
  zoology
  a&p
  medical microbiology
  neurobiology
  bacteriology

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Google Trends

Scale is based on the average worldwide traffic of microbiology in all years. Click on graph for more.
microbiology
biochemistry
biology