The best replacement for flot is jqplot.

The best alternatives to flot are rated as following:
★★★★★  jqplot
★★★★  highcharts
★★★★  flotr2
★★★★  google charts
★★★  chartjs
★★★  rickshaw
★★★  morris
★★★  feba
★★  dygraphs
★  flotr
★  bkln
★  google chart api

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Google Trends

Scale is based on the average worldwide traffic of flot in all years. Click on graph for more.
flot
jqplot
highcharts