The best replacement for dna fingerprinting is dna profiling.

The best alternatives to dna fingerprinting are rated as following:
★★★★★  dna profiling
★★★★★  fingerprinting
★★  traditional fingerprinting
★★  blood typing
★  ink fingerprinting
★  regular fingerprinting
★  southern blot
★  profiling
★  dna sequencing
★  dna typing
  conventional fingerprinting

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Speaking about dna fingerprinting, one probably shouldn't forget about criminal cases.

Other search terms related to dna fingerprinting and their ratings are:
★★★★★ criminal cases
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dna fingerprinting
dna profiling
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