The best replacement for boxcryptor is truecrypt.

The best alternatives to boxcryptor are rated as following:
★★★★★  truecrypt
★★★★★  boxcryptor classic
★★★★  cloudfogger
★★★  encfs
★★★  cryptsync
★★★  spideroak
★★  vivo
★  wuala
★  viivo
★  datalocker
  encfs4win

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boxcryptor
truecrypt
boxcryptor classic