The best replacement for bioengineering is biomedical engineering.

The best alternatives to bioengineering are rated as following:
★★★★★  biomedical engineering
★★★  chemical engineering
★★★  biology
★★★  biotechnology
★★  biochemistry
★★  biomedical
★  biomolecular engineering
★  genetic engineering
★  biological engineering
★  bioinformatics
  environmental engineering
  biological sciences
  biological science

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Google Trends

Scale is based on the average worldwide traffic of bioengineering in all years. Click on graph for more.
bioengineering
biomedical engineering
chemical engineering